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Fundamental differences in DOM composition at the Bermuda Atlantic time series (BATS) stationversusthe Hawai’i time series station ALOHA. 

ABSTRACT When the oligotrophic microbial community was amended with Synechococcus -derived dissolved organic matter (SDOM) and incubated under the dark condition, archaea relative abundance was initially very low but made up more than 60% of the prokaryotic community on day 60, and remained dominant for at least 9 months. The archaeal sequences were dominated by Candidatus Nitrosopumilus , the Group I.1a Thaumarchaeota. The increase of Thaumarchaeota in the dark incubation corresponded to the period of delayed ammonium oxidation upon an initially steady increase in ammonia, supporting the remarkable competency of Thaumarchaeota in energy utilization and fixation of inorganic carbon in the ocean. IMPORTANCE Thaumarchaeota, which are ammonia-oxidizing archaea (AOA), are mainly chemolithoautotrophs that can fix inorganic carbon to produce organic matter in the dark. Their distinctive physiological traits and high abundance in the water column indicate the significant ecological roles they play in the open ocean. In our study, we found predominant Thaumarchaeota in the microbial community amended with cyanobacteria-derived lysate under the dark condition. Furthermore, Thaumarchaeota remained dominant in the microbial community even after 1 year of incubation. Through the ammonification process, dissolved organic matter (DOM) from cyanobacterial lysate was converted to ammonium which was used as an energy source for Thaumarchaeota to fix inorganic carbon into biomass. Our study further advocates the important roles of Thaumarchaeota in the ocean’s biogeochemical cycle. 

Hydraulic fracturing requires the injection of large volumes of fluid to extract oil and gas from low permeability unconventional resources ( e.g. , shale, coalbed methane), resulting in the production of large volumes of highly complex and variable waste fluids. Shale gas fluid samples were collected from two hydraulically fractured wells in Morgantown, WV, USA at the Marcellus Shale Energy and Environment Laboratory (MSEEL) and analyzed using ultrahigh resolution mass spectrometry to investigate the dissolved organic sulfur (DOS) pool. Using a non-targeted approach, ions assigned DOS formulas were analyzed to identify dominant DOS classes, describe their temporal trends and their implications, and describe the molecular characteristics of the larger DOS pool. The average molecular weight of organic sulfur compounds in flowback decreased and was lowest in produced waters. The dominant DOS classes were putatively assigned to alcohol sulfate and alcohol ethoxysulfate surfactants, likely injected as fracturing fluid additives, on the basis of exact mass and homolog distribution matching. This DOS signature was identifiable 10 months after the initial injection of hydraulic fracturing fluid, and an absence of genes that code for alcohol ethoxysulfate degrading proteins ( e.g. , sulfatases) in the shale well genomes and metagenomes support that these additives are not readily degraded biologically and may continue to act as a chemical signature of the injected fluid. Understanding the diversity, lability, and fate of organic sulfur compounds in shale wells is important for engineering productive wells and preventing gas souring as well as understanding the consequences of unintended fluid release to the environment. The diversity of DOS, particularly more polar compounds, needs further investigation to determine if the identified characteristics and temporal patterns are unique to the analyzed wells or represent broader patterns found in other formations and under other operating conditions. 

Abstract Picocyanobacteria make up half of the ocean’s primary production, and they are subjected to frequent viral infection. Viral lysis of picocyanobacteria is a major driving force converting biologically fixed carbon into dissolved organic carbon (DOC). Viral-induced dissolved organic matter (vDOM) released from picocyanobacteria provides complex organic matter to bacterioplankton in the marine ecosystem. In order to understand how picocyanobacterial vDOM are transformed by bacteria and the impact of this process on bacterial community structure, viral lysate of picocyanobacteria was incubated with coastal seawater for 90 days. The transformation of vDOM was analyzed by ultrahigh-resolution mass spectrometry and the shift of bacterial populations analyzed using high-throughput sequencing technology. Addition of picocyanobacterial vDOM introduced abundant nitrogen components into the coastal water, which were largely degraded during the 90 days’ incubation period. However, some DOM signatures were accumulated and the total assigned formulae number increased over time. In contrast to the control (no addition of vDOM), bacterial community enriched with vDOM changed markedly with increased biodiversity indices. The network analysis showed that key bacterial species formed complex relationship with vDOM components, suggesting the potential correspondence between bacterial populations and DOM molecules. We demonstrate that coastal bacterioplankton are able to quickly utilize and transform lysis products of picocyanobacteria, meanwhile, bacterial community varies with changing chemodiverisity of DOM. vDOM released from picocyanobacteria generated a complex labile DOM pool, which was converted to a rather stable DOM pool after microbial processing in the time frame of days to weeks. 

Permafrost sediments contain one of the largest reservoirs of organic carbon on Earth that is relatively stable when it remains frozen. As air temperatures increase, the shallow permafrost thaws which allows this organic matter to be converted into potent greenhouse gases such as methane (CH4) and carbon dioxide (CO2) through microbial processes. Along the Beaufort Sea coast in the vicinity of the Tuktoyaktuk Peninsula, Northwest Territories, Canada, warming air temperatures are causing the active layer above permafrost to deepen, and a number of active periglacial processes are causing rapid erosion of previously frozen permafrost. In this paper, we consider the biogeochemical consequences of these processes on the permafrost sediments found at Tuktoyaktuk Island. Our goals were to document the in situ carbon characteristics which can support microbial activity, and then consider rates of such activity if the permafrost material were to warm even further. Samples were collected from a 12mpermafrost core positioned on the top of the island adjacent to an eroding coastal bluff. Downcore CH4, total organic carbon and dissolved organic carbon (DOC) concentrations and stable carbon isotopes revealed variable in situ CH4 concentrations down core with a sub-surface peak just below the current active layer. The highest DOC concentrations were observed in the active layer. Controlled incubations of sediment from various depths were carried out from several depths anaerobically under thawed (5°C and 15°C) and under frozen (−20°C and −5°C) conditions. These incubations resulted in gross production rates of CH4 and CO2 that increased upon thawing, as expected, but also showed appreciable production rates under frozen conditions. This dataset presents the potential for sediments below the active layer to produce potent greenhouse gases, even under frozen conditions, which could be an important atmospheric source in the actively eroding coastal zone even prior to thawing.